PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g066250.1.1
Common NameLOC101249854
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 135aa    MW: 15302.2 Da    PI: 6.7758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g066250.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132547123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Solyc09g066250.1.1 25 YECVFCKRGFNTAQALGGHMNIH 47
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-62352No hitNo description
PfamPF139121.3E-52549IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6162552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKNSSTHQEV DLQQKHQENG IGRFYECVFC KRGFNTAQAL GGHMNIHRKD RIRINRSSRI  60
NGPYLTCFPG HTPTTTIGPF VMNGPDCGSE DNRPQCLNLL GDDWRIFQFG ENMEKNKGIL  120
EDDLDLELRL GHDP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.234490.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g066250.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166047.13e-85PREDICTED: zinc finger protein 8-like
TrEMBLA0A3Q7I4Q03e-96A0A3Q7I4Q0_SOLLC; Uncharacterized protein
STRINGSolyc09g066250.1.16e-97(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-12C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]