PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g066270.2.1
Common NameLOC101245988
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 245aa    MW: 27464.2 Da    PI: 5.9127
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g066270.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.6e-3971071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l
  Solyc09g066270.2.1   7 PCGACKFLRRKCIKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVFNL 97 
                         7*************************89*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +a+la+lke+
  Solyc09g066270.2.1  98 QAQLASLKEQ 107
                         *****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3476108IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTGTGSPCGA CKFLRRKCIK GCVFAPYFCY EQGATHFSAI HKVFGASNVS KLLAHIPVSD  60
RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQAAA QNIQNGSNYI  120
TNPNYDKFQD VQSWFHHQSE NQNTMPQFDH SSLTSNNNIG SSIPYYDENN YNNNMTSNDH  180
NYHMGNNYEN INFVVPIKEN LSSFEEGGSC SVDSSFDNNK QWTFQDHDVV DDLQSVAFRY  240
LQHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3631017104LOB family transfactor Ramosa2.1
5ly0_B8e-3631017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g066270.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247346.10.0LOB domain-containing protein 29
SwissprotQ9SLB63e-65LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A3Q7J0G30.0A0A3Q7J0G3_SOLLC; Uncharacterized protein
STRINGSolyc09g066270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-67LBD family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]