PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g083360.2.1

Common Name

LOC101245202

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 234aa MW: 27132.9 Da PI: 9.1353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g083360.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.4e-06	82	128	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er RR++ ++++ +L +llP +K++K +i++ A++ I +Lq Solyc09g083360.2.1 82 KHMIKERIRREKQKQSYLNLYKLLPMG-----TKNEKNAIVQTATRRIEELQ 128 68899******************97.....8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-10	69	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.03E-5	76	129	No hit	No description
PROSITE profile	PS50888	10.366	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-5	82	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEEFFQVSWF CDDENETNNN FVVNQSAFVS FGSKSNEGFG VSSYGNVSMN HRNMNKRMIE 60 FLKKNWSPKN GQVKIEKEKV HKHMIKERIR REKQKQSYLN LYKLLPMGTK NEKNAIVQTA 120 TRRIEELQKY KENLEKRNDE IQLILAQSDK KEEEFEKAKI KAKVGNPICG VDSMLEVLKC 180 LRNCETKANS IQSSFSHQEF STLIEIETKS GAAEIEKAVQ NTLFEVERNL RAH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8992	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	4380887	0.0

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g083360.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247648.1	1e-171	transcription factor bHLH92 isoform X1
TrEMBL	A0A3Q7I6U6	1e-170	A0A3Q7I6U6_SOLLC; Uncharacterized protein
STRING	Solyc09g083360.2.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21
Representative plant	OGRP9763	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc09g083360.2.1
Entrez Gene	101245202

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]