PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g007970.1.1

Common Name

LOC101262361

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 256aa MW: 28597.3 Da PI: 7.4969

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g007970.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.2e-29	88	145	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D +WrKYGqK++kgs++pr+YYrC+s gCp+kk+ver+++dp+v++itY++ Hnh+ Solyc10g007970.1.1 88 DSSTWRKYGQKPIKGSPYPRGYYRCSSLkGCPAKKQVERCHHDPNVLIITYSSGHNHP 145 6779********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-30	80	147	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-26	82	147	IPR003657	WRKY domain
SMART	SM00774	2.8E-32	86	146	IPR003657	WRKY domain
Pfam	PF03106	7.9E-25	88	145	IPR003657	WRKY domain
PROSITE profile	PS50811	28.966	88	147	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEGVLQKDPY LHKQEDSFQR HSIKVKRYKA ENSVEGSVSN DDQTTEVNMP LPRKLSKKGA 60 KKRVISVPIK DCDISRSNYK GEIYPPFDSS TWRKYGQKPI KGSPYPRGYY RCSSLKGCPA 120 KKQVERCHHD PNVLIITYSS GHNHPLPAAA TKHRHPTTSF AATNTEQSTI FTDQPENDFI 180 MAEVGAGELL GCFSYVGPTL LECTSPTMVG STWVDDDVAF MLPIGEEDQS LFGDLGELPE 240 CSMVFRRYNR IVDGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-19	88	147	16	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g007970.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248483.1	0.0	probable WRKY transcription factor 65
TrEMBL	A0A3Q7IB32	1e-148	A0A3Q7IB32_SOLLC; Uncharacterized protein
STRING	Solyc10g007970.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-56	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Solyc10g007970.1.1
Entrez Gene	101262361

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]