PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g008250.1.1

Common Name

LOC101259680

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 234aa MW: 26446.1 Da PI: 8.2066

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g008250.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.5e-05	19	64	6	52
HHHHHHHHHHHHHHHHHHHCTSCCC...............TTS-STCHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas............kapskKlsKaeiLekAveYIk 52 + +E++RR+ +++ ++L +l+P+ A++YIk Solyc10g008250.1.1 19 KDVEKNRRNYMKNLCNQLYSLIPSTHhsretmglqdkiD-------------AAIKYIK 64 689*********************533444444444330.............4444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-6	15	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-6	18	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEGCQRSSSA PAGVKLERKD VEKNRRNYMK NLCNQLYSLI PSTHHSRETM GLQDKIDAAI 60 KYIKSSEMKL EKKKIHLEKL SRLSGRKRPK SSNSTNGPSP STGLSSSPQI QFHEMGPNMV 120 VVLISGLDNI ATFNNIIRLC HDEGVEVVYA NFTLNGNSML QISHETKINM SSTMECRAAN 180 LCDKLKELLH GKSYDNELES QLYLWDYIVE SELLKFYDVE FLPSTSQNSN MYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RLSGRKRPK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g008250.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248474.1	1e-174	uncharacterized protein LOC101259680
TrEMBL	A0A3Q7IB92	1e-172	A0A3Q7IB92_SOLLC; Uncharacterized protein
STRING	Solyc10g008250.1.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc10g008250.1.1
Entrez Gene	101259680

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]