PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g008270.2.1

Common Name

LOC101265482

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 236aa MW: 26917.9 Da PI: 7.688

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g008270.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	16	65	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + +E++RR+++++ ++L ++lP+ +s + + ++ + Av++I L Solyc10g008270.2.1 16 KYVEKNRRNHMKNLCNQLHSMLPThSSTSKETTMTVPDQIDAAVKHIETL 65 568*********************65566666699999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.858	10	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-9	13	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	15	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	17	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.28E-5	18	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MERHLKSKLA PKLERKYVEK NRRNHMKNLC NQLHSMLPTH SSTSKETTMT VPDQIDAAVK 60 HIETLKMNLE KNKKHLEELK MGPNKAQSLN QTNEPGPITK SPPQIEFHEM GPNMVVVLIN 120 SLDNIATFNN IIRLCHKEGV EVVSTSFKLN GNSTLQISHE PKVQINKSSP MEFKATSLCD 180 KMKELIYGPS CNNDIESNQH LWDYIIESGL IEFNTIELPP IENHMKNIYE TPSFF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g008270.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248173.1	1e-173	transcription factor bHLH162-like
TrEMBL	A0A3Q7IC80	1e-172	A0A3Q7IC80_SOLLC; Uncharacterized protein
STRING	Solyc10g008270.2.1	1e-172	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc10g008270.2.1
Entrez Gene	101265482

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]