PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g009080.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 136aa    MW: 15746.4 Da    PI: 7.831
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g009080.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.95.9e-4351127278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cqve+C+ad+ +ak+yhrrhkvCe+h+kap+vl++gl+qrfCqqCsrfh+l efD++k+sCrrrLa+hnerrrk+++
  Solyc10g009080.2.1  51 CQVEECTADMVNAKTYHRRHKVCEFHAKAPEVLIDGLRQRFCQQCSRFHQLAEFDDAKKSCRRRLAGHNERRRKSAQ 127
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.2E-571135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.4E-3444112IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.22348125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.61E-3949128IPR004333Transcription factor, SBP-box
PfamPF031105.8E-3351124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MENNKWEGKR SMEEDDDEED EDVVEDTKRK RVLTRSGRKV STAEGSRQPS CQVEECTADM  60
VNAKTYHRRH KVCEFHAKAP EVLIDGLRQR FCQQCSRFHQ LAEFDDAKKS CRRRLAGHNE  120
RRRKSAQDYP GEGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-37511241184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.30652e-64flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g009080.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307609.11e-96squamosa promoter binding-like protein 3
SwissprotQ387417e-55SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A3Q7IBL63e-95A0A3Q7IBL6_SOLLC; Squamosa promoter-binding-like protein
STRINGSolyc10g009080.2.15e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-43squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ferreira e Silva GF, et al.
    microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development.
    Plant J., 2014. 78(4): p. 604-18
    [PMID:24580734]
  3. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]