PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g009110.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 223aa    MW: 24239.4 Da    PI: 9.2881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g009110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-212676256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g+
  Solyc10g009110.1.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRGA 76
                        6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-392689IPR001471AP2/ERF domain
PROSITE profilePS5103224.0522683IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-222683IPR016177DNA-binding domain
PfamPF008474.5E-142675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-332684IPR001471AP2/ERF domain
CDDcd000188.05E-342683No hitNo description
PRINTSPR003671.4E-112738IPR001471AP2/ERF domain
PRINTSPR003671.4E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAPKEKIGAV TAMAMVNLNG ISKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDNAA REFRGAKAKT NFPKLEMEKE EDLKFAVKNE INRSPSQTST VESSSPVMVD  120
SSSPLDLSLC GSIGGFNHHT VKFPSSGGGF TGSVQAVNHM YYIEALARAG VIKLETNRKK  180
TVDYLGGGDS DSSTVIDFMR VDVKSTTAGL NLDLNFPPPE NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222283163ATERF1
3gcc_A5e-222283163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.41010.0callus| flower| fruit| leaf| root| trichome
Function -- GeneRIF ? help Back to Top
  1. The opposing patterns of regulation of mRNA accumulation are consistent with the activator function of Pti4 and a repressor function for LeERF3b in ethylene responses. [LeERF3b]
    [PMID: 17570560]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g009110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141260.0Lycopersicon esculentum clone 133235F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233796.21e-165ethylene response factor 3
TrEMBLA0A3Q7ICU71e-164A0A3Q7ICU7_SOLLC; Uncharacterized protein
STRINGSolyc10g009110.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-28erf domain protein 9
Publications ? help Back to Top
  1. Hongxing Z, et al.
    Cloning and DNA-binding properties of ethylene response factor, LeERF1 and LeERF2, in tomato.
    Biotechnol. Lett., 2005. 27(6): p. 423-8
    [PMID:15834808]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Chen G,Hu Z,Grierson D
    Differential regulation of tomato ethylene responsive factor LeERF3b, a putative repressor, and the activator Pti4 in ripening mutants and in response to environmental stresses.
    J. Plant Physiol., 2008. 165(6): p. 662-70
    [PMID:17570560]