PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g012200.1.1

Common Name

LOC101243747

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 168aa MW: 19113.1 Da PI: 8.9788

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g012200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.7	1.9e-10	27	50	17	40
HHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 17 rngilKKAeELSvLCdaevaviif 40 ++ ++KKA+ LS+LC+++va+ii+ Solyc10g012200.1.1 27 QKALFKKASDLSILCGIQVAIIIL 50 689*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.88E-10	24	86	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.321	25	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-8	25	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MESKNSNVDS AVAKDKRAEG GKILKMQKAL FKKASDLSIL CGIQVAIIIL FINRQPIVFG 60 KPDAELVIHQ FIEANHPTAP RFYMKMKKKE EENKKKGKSV EDDIQSQDFE SPYLESLLKL 120 YEGLREFENQ LTKEMDLKQL NQEIEKHKDP KLMNVASSST LPTNFNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g012200.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244887	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6i2 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248432.1	1e-119	agamous-like MADS-box protein AGL62
TrEMBL	A0A3Q7IDE0	1e-118	A0A3Q7IDE0_SOLLC; Uncharacterized protein
STRING	Solyc10g012200.1.1	1e-118	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-10	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Solyc10g012200.1.1
Entrez Gene	101243747

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]