PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g018560.1.1
Common NameLOC101268621
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 257aa    MW: 29195.1 Da    PI: 7.5935
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g018560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18172206135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Solyc10g018560.1.1 172 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 206
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.4E-833254IPR016679Transcription factor, GATA, plant
SMARTSM004015.8E-14166216IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451166202IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-14169230No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13170204IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.37E-13171218No hitNo description
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
PfamPF003206.8E-16172206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDVYGRLTPE VFRIDDFLDF SNEEDIFSSS KTAIDFDLNH HYQPPPTDSI ADTGCYYHAP  60
PNSVDFTDKL CVPSDDVAEL EWLSNFVEDS SNNFPSNNLT QTMYHLNNTN TILHSKSRSK  120
RSRNSNSTSW NTSSLQRHKS ANQKNSNQDE NSGDYNSNKL SNNSKIITSR KCTHCASEKT  180
PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKEII  240
DQQQQHGMYG HHYPVC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g018560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248553.10.0GATA transcription factor 4-like
SwissprotO497417e-70GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A3Q7ID170.0A0A3Q7ID17_SOLLC; GATA transcription factor
STRINGSolyc10g018560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-60GATA transcription factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]