PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g018710.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 172aa    MW: 19746.5 Da    PI: 10.279
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g018710.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.51.5e-3149144189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+k rhsk++T++g++dRRvRls + a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s+  ++++ + s ++++ +  
  Solyc10g018710.1.1  49 ATGRKYRHSKVSTAKGPKDRRVRLSPNAAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALCEFPNNFHSSKlNPKKMQYSFDQEQCPef 139
                         589*************************************************************944444333456666665554444433 PP

                 TCP  89 ....k 89 
                             +
  Solyc10g018710.1.1 140 sqenR 144
                         32222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2950138IPR005333Transcription factor, TCP
PROSITE profilePS5136927.78352110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPQSLCKKPE KWANFTVSKQ ELNKGTRRMK QKRAKTDVIE GHGGRTIRAT GRKYRHSKVS  60
TAKGPKDRRV RLSPNAAIQF YDVQDRLGYD RPSKAIDWLI KEAKAAIDAL CEFPNNFHSS  120
KLNPKKMQYS FDQEQCPEFS QENRGVPNSE CGVQDKQQEV NYHIPILFSL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1957110154Putative transcription factor PCF6
5zkt_B6e-1957110154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632RRMKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g018710.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447670.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-66a15 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-115transcription factor TCP10-like
TrEMBLA0A3Q7J8J01e-126A0A3Q7J8J0_SOLLC; Uncharacterized protein
STRINGSolyc10g018710.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-35TCP domain protein 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]