PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g019150.1.1

Common Name

LOC104644286

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 165aa MW: 18552.1 Da PI: 9.8254

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g019150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.6e-13	56	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT++E+ ++++ +G+g+W++Ia+ + Rt q+ s+ qky Solyc10g019150.1.1 56 NPWTEDEQIAFLKGLDFHGKGSWSKIAKDFVPSRTSTQVASHAQKY 101 69***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.136	50	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-11	52	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.03E-14	53	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-13	53	104	IPR006447	Myb domain, plants
SMART	SM00717	7.7E-10	54	104	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-11	56	101	IPR001005	SANT/Myb domain
CDD	cd00167	2.64E-10	57	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTASSAGG AMSKKDSMER RIKRGNPWTE 60 DEQIAFLKGL DFHGKGSWSK IAKDFVPSRT STQVASHAQK YFMRLLDANE RKYHKKSSVF 120 DLRLDQLEDT HDHAIVPLGN NYESQNVPSV IPNYYMMKRV LPLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g019150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC242488	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-72f2 map 10, complete sequence
GenBank	AC242494	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-40l2 map 10, complete sequence
GenBank	AC242828	0.0	Solanum lycopersicum strain Heinz 1706 clone sle-21d10 map 10, complete sequence
GenBank	AC245373	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-58c22 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015054810.1	1e-119	transcription factor MYBS3-like
TrEMBL	A0A3Q7IDB2	1e-122	A0A3Q7IDB2_SOLLC; Uncharacterized protein
STRING	Solyc10g019150.1.1	1e-122	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7454	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	4e-28	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Solyc10g019150.1.1
Entrez Gene	104644286

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]