PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g049870.1.1

Common Name

LOC101255146

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 173aa MW: 19498 Da PI: 10.5943

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g049870.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Solyc10g049870.1.1 46 FSCNFCKRKFYSSQALGGHQNAH 68 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.68E-7	42	73	No hit	No description
PROSITE profile	PS50157	10.99	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MRRAEDGYQG TSVLDQGEWL NLSLGRNLPS ISKESESHIP TSGKVFSCNF CKRKFYSSQA 60 LGGHQNAHKR ERGTVRQYQS QRMMTMMALP INNPMFRSLG MIPHSLLHKS SRDARATAAT 120 FSEASAGYQR TSLTNQMDRS FDLKWPGSFQ LNQQQTKDHT TNPTKLDLNL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g049870.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244957	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-1i2 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071494.1	1e-128	zinc finger protein 2-like
TrEMBL	A0A3Q7IFY3	1e-126	A0A3Q7IFY3_SOLLC; Uncharacterized protein
STRING	Solyc10g049870.1.1	1e-127	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3269	13	13
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	8e-18	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Solyc10g049870.1.1
Entrez Gene	101255146

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]