PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g050950.1.1
Common NameLOC101268151
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18602.2 Da    PI: 6.8041
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g050950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.12.3e-081563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+     +fskRrng++K  + L    d+++ +i+fs+t k + +
  Solyc10g050950.1.1 15 KKIENEKALLSSFSKRRNGLFKATNNLIKEFDVDIGIIVFSPTSKPHSF 63
                        6899999999********************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-12766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.269767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17878IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-8929IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MENKKIKGRQ KIPMKKIENE KALLSSFSKR RNGLFKATNN LIKEFDVDIG IIVFSPTSKP  60
HSFFHPTTDA VISRFQNPDM QLSDETHLAT VFARNSVNQL EKKLEELDIK EKIGSDRTNY  120
LDQMTETRQK GWWESIEQLN EDEVSKLEAW LDVASLLCTT V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g050950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248898.11e-116agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP71e-100A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050950.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.17e-20AGAMOUS-like 57
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]