PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g054010.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 164aa    MW: 18702.9 Da    PI: 4.9973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g054010.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-103678547
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                        ++ +r+++NRe+A rsR RK++ ++ L     +L +eN +   
  Solyc10g054010.1.1 36 RKRKRMISNRESAWRSRMRKQKHLDDLMSQLSNLMKENNEILT 78
                        6789**********************************86554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-143296IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7263497IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-1036108No hitNo description
PfamPF001702.0E-83677IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-123688No hitNo description
CDDcd147023.30E-153787No hitNo description
PROSITE patternPS0003603954IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGTSSG SGSGSGSYTL LNSGSEEDLQ QLMDERKRKR MISNRESAWR SRMRKQKHLD  60
DLMSQLSNLM KENNEILTNM SVTTQNYLNI EAENSILRAQ VSELKQRFES LTKITSVLSY  120
NGNINEISND QIFHESYLVD ALIQNEFWND MYHPIMTADI MQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13556RKRKRMISNRESAWRSRMRKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.142771e-133flower| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43879341e-133
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g054010.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225641.11e-60PREDICTED: bZIP transcription factor 11-like
TrEMBLA0A3Q7II011e-115A0A3Q7II01_SOLLC; Uncharacterized protein
STRINGSolyc10g054010.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-35basic leucine-zipper 44
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]