PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g076390.1.1

Common Name

LOC104649830

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 181aa MW: 20389 Da PI: 8.5834

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g076390.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	110.8	2.3e-34	36	105	4	75
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 r p+ +Er +nk+RE+ RR +a ki+aGLRa+Gnyklpk+aD n+ l ALc+eAGw ve+DGt k p Solyc10g076390.1.1 36 FRYPSDRERQKNKQREKNRRRVAHKIFAGLRAHGNYKLPKHADTNDLLMALCKEAGWHVEEDGTIKGK--DP 105 5899************************************************************7543..33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.8E-31	37	124	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGEDKKISGV RGCIKTSRGP WLVHRTAKDG SVVTRFRYPS DRERQKNKQR EKNRRRVAHK 60 IFAGLRAHGN YKLPKHADTN DLLMALCKEA GWHVEEDGTI KGKDPVKDLP RLIDVDSAQV 120 SMEDQTKEGD YCKCEDQIKN GEYYCKCEVD MNNVETEKGR PEGSLTSSAF DVNLTLSLSS 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-12	37	99	372	434	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g076390.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010327721.1	1e-133	protein BRASSINAZOLE-RESISTANT 2-like
Swissprot	Q9S7F3	1e-14	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	A0A3Q7IIT4	1e-132	A0A3Q7IIT4_SOLLC; Uncharacterized protein
STRING	Solyc10g076390.1.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30
Representative plant	OGRP10084	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.6	1e-16	BES1 family protein

Link Out ? help Back to Top
Phytozome	Solyc10g076390.1.1
Entrez Gene	104649830

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]