PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g078380.1.1
Common NameLOC101266278
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 262aa    MW: 29873.4 Da    PI: 6.9372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g078380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1175122254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riNs ++ Lr+ll  +      Kl+Ka+ L k+v+ +++L
  Solyc10g078380.1.1  75 AKNHKEAERRRRERINSHLHSLRTLLSCN-----SKLDKASLLAKVVQRVREL 122
                         579***********************997.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-1272134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1372136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.55573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-976122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQQQQEDFQE NLESCNYFSK NKSSSSDNNM MGEYYGFDIE AIKNFCSSSP FYPQHNHVEF  60
QETIESNNNS PESRAKNHKE AERRRRERIN SHLHSLRTLL SCNSKLDKAS LLAKVVQRVR  120
ELKEQTSQIM QSETNLLFPS ETDEITVLSS NDCLADGRLL IKASLCCEDR FDLIPDLIET  180
LKSLGLSPIR AEMVTLGGRI HNVIVLAVDH KKESNNNNTD HDESSLLFLR DALRSIVQRS  240
SYGTGERGKR RRVLGQGTRN Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17385RAKNHKEAERRRR
28186ERRRRE
3248252KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g078380.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249130.10.0transcription factor bHLH106
SwissprotO806741e-51BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A3Q7IKB90.0A0A3Q7IKB9_SOLLC; Uncharacterized protein
STRINGSolyc10g078380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-54bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]