PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g078430.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 355aa    MW: 38424.6 Da    PI: 6.7303
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g078430.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.4e-2799181271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Solyc10g078430.1.1  99 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdatnsvagsdqkqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 181
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.9E-1276354IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.6E-4694186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3498181IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.1E-25100181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-21101182IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.56E-42187289IPR014889Transcription factor DP, C-terminal
SMARTSM011382.0E-67188352IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-42188304No hitNo description
PfamPF087813.2E-41189323IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLNNLEDGGK NSSEVSRGGN GRGGGGTRSW GTTVSGQSVS TSSSIGSPSS RSEAAMATPA  60
SDNTFLRLNN LDIHADDAGS QGTAGKKKRA QRATGGDKSG RGLRQFSMKV CEKVESKGRT  120
TYNEVADELV AEFSDATNSV AGSDQKQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWK  180
GLPRTDANDI EELKTERLNL RNRIEKKAAY LEELEDQYVG LQNLIKRNDQ LYGSGNAPSG  240
GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDNYILKAMN FCGRSNDGSV  300
PQNVSADGGE GPSSSMANMF QHHIPNPSAP NSSGRLPTSP PLPGILKARV KHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-4092187194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.78400.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g078430.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2449301e-141Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-17d2 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249135.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-157DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A3Q7IKD10.0A0A3Q7IKD1_SOLLC; Uncharacterized protein
STRINGSolyc10g078430.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-144Transcription factor DP
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]