PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g078970.1.1

Common Name

LOC104644359

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 206aa MW: 23776.2 Da PI: 8.6616

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g078970.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C +sF+++ L H++ H Solyc10g078970.1.1 79 YECYYCFRSFPTSQALGGHQNAH 101 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.47E-6	77	106	No hit	No description
Pfam	PF13912	1.6E-5	79	103	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.24	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEKIGREAVD YMNMKSFSQP LRKKSIRLFG KEFSVGDSTN MSESTDKNPL HHEPKPNTMS 60 ISANRIDKTG HVDEISRKYE CYYCFRSFPT SQALGGHQNA HKKERQNAKL SHLQSSIVHE 120 TNRNRFGEPS TAATRLTHYH STWSNINNNN VYSPNYNEAF WQIPPTIHHY QNNINPPSSF 180 SHDSFFPNDE EKREVQNHVS LDLHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g078970.1.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244593	1e-145	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44a10 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010312072.1	1e-154	zinc finger protein 8-like
TrEMBL	K4D2D8	1e-153	K4D2D8_SOLLC; Uncharacterized protein
STRING	Solyc10g078970.1.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26
Representative plant	OGRP2859	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	5e-20	zinc finger protein 8

Link Out ? help Back to Top
Phytozome	Solyc10g078970.1.1
Entrez Gene	104644359

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]