PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g079150.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 220aa MW: 24857.8 Da PI: 9.8786

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g079150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.8	2.1e-29	70	126	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ ++k+ ksrkpylheSRh+hA+rR+R gGrF Solyc10g079150.1.1 70 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 126 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.2E-33	68	129	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.792	69	129	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-26	71	126	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	72	94	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.0E-22	103	126	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGENLRAANQ FELMTPSSIA FKSYPFSEVP QYSGGNVTIA CGEPMVNQNM ERSSIVHHNG 60 RMILPVEVKE EPMYVNAKQY HGILRRRQLR AKAVLQQKVV KSRKPYLHES RHRHAMRRAR 120 DGGGRFLNTK KKIQSTTTTT NNNTTPSSRG KSSLDSNSSP NYLLNYEGDI GSSNNTNSVE 180 GFQFQSGIHN TTENLQLGCH YQWNLNDNNH CNCMHSEHF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	70	132	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	119	RHRHAMRRAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g079150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215487	0.0	Solanum lycopersicum chromosome 0 clone C00SLm0076E07, complete sequence
GenBank	AC244298	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence
GenBank	AC244588	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249201.2	1e-165	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_010312079.1	1e-165	nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	A0A3Q7IKS3	1e-163	A0A3Q7IKS3_SOLLC; Uncharacterized protein
STRING	Solyc10g079150.1.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13392	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	1e-29	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Solyc10g079150.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]