PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079220.2.1
Common NameLYC_68t000011, SUNLYC_67t000004
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 328aa    MW: 37030 Da    PI: 4.9153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079220.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.91.2e-20101263128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                          G+rF+Ptde+l+ +yL k v +k+  + + i+  ++y + +Pw+L    + ++   yfF+k +k+    +r +r  +  g Wk + k k+
  Solyc10g079220.2.1  10 FGVRFRPTDEQLI-RYLIKFVVSKNYVC-KDIEFEELYGSkKPWELL---EDSSGTKYFFTKLKKRD---TRFSRtLVGGGSWKGKSKGKS 92 
                         69***********.99*****9999888.5588888887659****6...3344577****998865...68888667899***9999999 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +   +++g+kkt  + ++++   +  +W+m+ey+l
  Solyc10g079220.2.1  93 IGA---KKIGMKKTYNYEENKKDVVNDVSWIMKEYSL 126
                         977...88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-205153IPR003441NAC domain
PROSITE profilePS5100524.5488153IPR003441NAC domain
PfamPF023652.9E-1611126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAIESPDAEF GVRFRPTDEQ LIRYLIKFVV SKNYVCKDIE FEELYGSKKP WELLEDSSGT  60
KYFFTKLKKR DTRFSRTLVG GGSWKGKSKG KSIGAKKIGM KKTYNYEENK KDVVNDVSWI  120
MKEYSLDDKV IKLLSNRGVM KHKDVVLCYI RCKVKKSRNH MPTTTGSGYD DGDGDDTLLL  180
PQGPNEFGYG DQFPQQIVNP MQNVGSGYVG CDDTLVPQGP NEFGYSDQLP QQIVKPMQNI  240
ESGYVGCDDE NRNDMTTQPQ WPMEDHQLSQ LIVTFPMVQG NDAAMNEGNM NGELVFPYQE  300
EQVLQNVEET AGMAISVALL VYFLSTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079220.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154870.0Solanum lycopersicum chromosome 0 clone C00SLm0076E07, complete sequence
GenBankEF0949390.0Solanum lycopersicum cv. Heinz1706 BAC clone Le_HBa0072D08, complete sequence
GenBankEF0949400.0Solanum lycopersicum cv. Sun1642 phage lambda clones EK36, EK50, EK54, EK57, EK58, EK59, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312399.10.0NAC domain-containing protein 105
TrEMBLB1N6660.0B1N666_SOLLC; Uncharacterized protein
STRINGSolyc10g079220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-06NAC domain containing protein 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Xiao H,Jiang N,Schaffner E,Stockinger EJ,van der Knaap E
    A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit.
    Science, 2008. 319(5869): p. 1527-30
    [PMID:18339939]