PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g079680.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 194aa    MW: 22099.7 Da    PI: 10.408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g079680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13357154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                        ++ +hn+ Er+RR+++N  +++Lr+llP+++ k ++kKls  +++  + eYI +L
  Solyc10g079680.1.1  3 KKLNHNASERNRRKKMNFLYSTLRSLLPPPTnKHQKKKLSFPATVSYVQEYIPEL 57
                        6789*************************665888888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.986257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-8262No hitNo description
SuperFamilySSF474596.94E-13273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-11262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-6863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEKKLNHNAS ERNRRKKMNF LYSTLRSLLP PPTNKHQKKK LSFPATVSYV QEYIPELKKE  60
IERLSKTKDL LLSKKSNYSL LKIDDNNKRK LIIGGTSCNS STTSICASQL SNSQVLVQIS  120
TTQENNFPIS QVFASVEEDG LILLNASSFK SFGDKIFHSL HFQMQGPIEM DIQVLKTKLL  180
VMCEKRRKNS YIV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.173470.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g079680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249750.21e-138transcription factor bHLH100
TrEMBLA0A3Q7IL291e-136A0A3Q7IL29_SOLLC; Uncharacterized protein
STRINGSolyc10g079680.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-35bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]