PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g081350.1.1

Common Name

LOC101259896

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 351aa MW: 38396.1 Da PI: 9.2236

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g081350.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	6.9e-16	280	322	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk Solyc10g081350.1.1 280 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLKR 322 79*************************************9993 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.6E-16	271	323	No hit	No description
SMART	SM00338	1.8E-14	276	348	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.634	278	323	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.19E-11	280	325	No hit	No description
CDD	cd14707	1.24E-24	280	325	No hit	No description
Pfam	PF00170	6.0E-13	280	323	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	283	298	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGSQGGGGGG GGGVGVNSIG VTQAQAQAQA HAQDPKTNAL ARQGSLYSLT LDEVQNQLGD 60 LGKPLSNMNL DELLKTVWTV EASQGMGGTD YGVLQHGQDA SGSSLNRQSS ITLTSDLSKK 120 TVDQVWQDIQ QGHKRDRIDR KAQERQPTLG EMTLEDFLVK AGVVAESTPG KKSLGSVLGV 180 DSMALPQQQA QWSQYQMQAM HPLPPQQHQQ QQQNMLPVFM PSHSAQQPLT IVSNPTIDAA 240 YPESQMTMSP TALLGTLSDT QTLGRKRVAP DDVVEKTVER RQKRMIKNRE SAARSRARKQ 300 AYTHELENKV SRLEEENERL KRQKEIEQVL PSVPLPEPKY QLRRTSSAPF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGSQGGGGGG GGGVGVNSIG VTQAQAQAQA HAQDPKTNAL ARQGSLYSLT LDEVQNQLGD  60
LGKPLSNMNL DELLKTVWTV EASQGMGGTD YGVLQHGQDA SGSSLNRQSS ITLTSDLSKK  120
TVDQVWQDIQ QGHKRDRIDR KAQERQPTLG EMTLEDFLVK AGVVAESTPG KKSLGSVLGV  180
DSMALPQQQA QWSQYQMQAM HPLPPQQHQQ QQQNMLPVFM PSHSAQQPLT IVSNPTIDAA  240
YPESQMTMSP TALLGTLSDT QTLGRKRVAP DDVVEKTVER RQKRMIKNRE SAARSRARKQ  300
AYTHELENKV SRLEEENERL KRQKEIEQVL PSVPLPEPKY QLRRTSSAPF *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g081350.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249361.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-97	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3Q7IL08	0.0	A0A3Q7IL08_SOLLC; Uncharacterized protein
STRING	Solyc10g081350.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-96	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Solyc10g081350.1.1
Entrez Gene	101259896

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]