PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g083560.1.1
Common NameLOC101245414
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 198aa    MW: 21165.4 Da    PI: 4.7951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g083560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-192071155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        + ykG+r++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  Solyc10g083560.1.1 20 PVYKGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAIAYDVAALALKG 71
                        68*******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-122071IPR001471AP2/ERF domain
PROSITE profilePS5103222.3922179IPR001471AP2/ERF domain
SMARTSM003804.3E-312185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-272181IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-192181IPR016177DNA-binding domain
CDDcd000181.90E-282281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSGANNGSGS GSGSESGRHP VYKGIRRRKS SGKWVSEIRE PRSPNRIWLG TFPTPEMAAI  60
AYDVAALALK GRDTELNFPN SAPSLPVPAT NSPRDIQTAA ACAAAAIGAA GDALIGGRSN  120
NSNSNSNSRT VSRDVEDNYL IPNNNEYNFM DEDLIFDMPN VIMNMAEGML LSPPRLNHLP  180
PDDDYIGGAD QNLWNYP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g083560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883650.11e-142ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-59ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3Q7JG661e-140A0A3Q7JG66_SOLLC; Uncharacterized protein
STRINGSolyc10g083560.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-47ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]