PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g084340.1.1
Common NameLOC101250649
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 463aa    MW: 51081.2 Da    PI: 6.5102
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g084340.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.2e-17134183155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Solyc10g084340.1.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183
                         78*******************......55************************998 PP
2AP241.14.4e-13226276155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+ + eAa+a+++a+ k +g
  Solyc10g084340.1.1 226 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDNEIEAARAYDKAAIKCNG 276
                         89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-16134193IPR016177DNA-binding domain
PfamPF008472.1E-9134183IPR001471AP2/ERF domain
CDDcd000186.08E-12135193No hitNo description
Gene3DG3DSA:3.30.730.104.5E-17135191IPR001471AP2/ERF domain
SMARTSM003805.9E-32135197IPR001471AP2/ERF domain
PROSITE profilePS5103217.82135191IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16226285IPR016177DNA-binding domain
CDDcd000183.42E-25226284No hitNo description
PfamPF008472.4E-8226276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15227284IPR001471AP2/ERF domain
SMARTSM003801.7E-31227290IPR001471AP2/ERF domain
PROSITE profilePS5103215.277227284IPR001471AP2/ERF domain
PRINTSPR003677.3E-6228239IPR001471AP2/ERF domain
PRINTSPR003677.3E-6266286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MFDLNLSFDD VSVEPISVLA SEKVDEMLFN QMENSGTSNS SIVNMETSST AADDEYFSPD  60
HHRDGYAFDI LKSDREAGDR GGFVVKELFP LVNGEVGLDL SANYGDLNEQ RIGKTPQQIL  120
QAKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGLDADINF NISDYEEDLK QMKNFSKEEF VHILRRQSNG FSRGSSKYRG VTLHKCGRWE  240
ARMGQLLGKK YIYLGLFDNE IEAARAYDKA AIKCNGREAV TNFEPNTYEE ALSSEADTGG  300
TDHNIDLNLG ISLSSYAENQ HGNTSQIGNF QCQHGSNGLP EHHGEVRTPA STTLKSKLLL  360
HGEHTLTQNP LHWNGSNGKG SAIEKGSEVD TSLKWMGHDQ NTYDGSPTLP LFSTAASSGF  420
GNSANTAPSA ASHQLHFGSG ALPFPHSPSL TNMNLSHHYC RS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g084340.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448860.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089448.10.0AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A3Q7IMC90.0A0A3Q7IMC9_SOLLC; Uncharacterized protein
STRINGSolyc10g084340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]