PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g017360.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 182aa MW: 20034.9 Da PI: 4.55

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g017360.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.3e-07	17	53	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +WT++E+ ++++ + +g+W++I+r +Rt+kq Solyc11g017360.1.1 17 SWTEQEHRSFLQGLAINEKGDWRSISRDCVITRTAKQ 53 7**************************8876788886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-6	14	53	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-6	16	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.4E-5	17	53	IPR009057	Homeodomain-like
CDD	cd00167	2.09E-5	17	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MQNHDSKADV EWRKKASWTE QEHRSFLQGL AINEKGDWRS ISRDCVITRT AKQEDADATG 60 TSQVPHTKDM IGSAYGGSQA VPNTSSESML PRDRTNAEQM IEVVGEESTD HIAVVNVGSD 120 VNVDAESSLL PSKQSCTAEG VTELRDVEEE ERKGKEEYIE RCVHITPTSK IESAASRIEN 180 N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g017360.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU302231	1e-112	S.lycopersicum DNA sequence from clone LE_HBa-291F9, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361808.1	2e-36	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_015170955.1	2e-36	PREDICTED: transcription factor DIVARICATA-like
TrEMBL	A0A3Q7ISW9	1e-96	A0A3Q7ISW9_SOLLC; Uncharacterized protein
STRING	Solyc11g017360.1.1	1e-131	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4454	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-13	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc11g017360.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]