PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g020670.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 375aa    MW: 39922 Da    PI: 8.0452
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g020670.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.77.1e-41821963115
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+ + s++ +++
  Solyc11g020670.1.1  82 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAPPSKS 172
                         5799****************************************************************99987778888877666664444 PP

                 TCP  93 saa.kskksqksaasalnlakesr 115
                         +    +  s + +a++l ++++ +
  Solyc11g020670.1.1 173 APLfIHGASASASAAMLGFHHHLS 196
                         444444444444444555555333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.94687141IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-3787200IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEFMEPHRKK LGDASNHHQH NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ  60
SISPPSTNSS TPNNNTISTL KVAKKPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA  180
SASASAAMLG FHHHLSTANT GFIQDPDENY MKKRFREDTT TSGATSPSPD KPGSDSSKPG  240
SNLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTAVSVG AGQSDHQLWQ YKSSRIGGLE  300
FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NNSRVDLGMN LEHHNQTQHQ  360
DSDSGDENHN DSQS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.21100.0fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g020670.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963300.0Solanum lycopersicum TCP transcription factor 12 (TCP12) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233806.10.0TCP transcription factor 12
SwissprotQ9C5185e-65TCP8_ARATH; Transcription factor TCP8
SwissprotQ9LQF07e-66TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A3Q7JKS50.0A0A3Q7JKS5_SOLLC; Uncharacterized protein
STRINGSolyc11g020670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-44TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]