PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g022480.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 129aa    MW: 14904.8 Da    PI: 7.0877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g022480.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.83e-0821234128
                 NAM   4 GfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.....kvkaeekew.y.fFskrdkkyatgkrknratksgyWk 84 
                         G++Fh + +e ++++L+  +++  ++      +++d+y   ePw +  +      ++a+++++ y +F++           ++  ++g Wk
  Solyc11g022480.1.1   2 GYHFHSSAKERLQFFLRFVAKSAMNDD-GLiTTNLDVYGEeEPWGIYsQgvptgGLEADDDDYsYrYFIT-----------KKNNNNGNWK 80 
                         99**********888887766666555.5525666*996549****733444442222222111212222...........22335799** PP

                 NAM  85 atgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++g++ +++ k     ++ ++g+kk + +    +   e  +W+m++y+l
  Solyc11g022480.1.1  81 QQGEEIPIFFKignvsTSLVMGTKKKMHYV---H---EFGHWIMKQYKL 123
                         *********997666555569*******99...2...3569******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.7481128IPR003441NAC domain
SuperFamilySSF1019412.09E-82123IPR003441NAC domain
PfamPF023653.7E-82123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MGYHFHSSAK ERLQFFLRFV AKSAMNDDGL ITTNLDVYGE EEPWGIYSQG VPTGGLEADD  60
DDYSYRYFIT KKNNNNGNWK QQGEEIPIFF KIGNVSTSLV MGTKKKMHYV HEFGHWIMKQ  120
YKLSPVFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g022480.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010312964.16e-91uncharacterized protein LOC104644586
TrEMBLA0A3Q7IU762e-91A0A3Q7IU76_SOLLC; Uncharacterized protein
STRINGSolyc11g022480.1.13e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Representative plantOGRP5881218
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]