PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g050730.1.1

Common Name

LOC101256155

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 202aa MW: 22579.4 Da PI: 10.0191

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g050730.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.6e-13	56	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT++E+ ++++ +G+g+W++Ia+ + Rt q+ s+ qky Solyc11g050730.1.1 56 NPWTEDEQTAFLKGLDFHGKGNWSKIAKDFVPSRTSTQVASHAQKY 101 69***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.473	50	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-12	51	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.47E-14	53	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-14	53	104	IPR006447	Myb domain, plants
SMART	SM00717	4.7E-11	54	104	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-11	56	101	IPR001005	SANT/Myb domain
CDD	cd00167	6.07E-11	57	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITTTTSAGG AMSKKDSMER RVKKGNPWTE 60 DEQTAFLKGL DFHGKGNWSK IAKDFVPSRT STQVASHAQK YFMRLLGANE RKYHKKSSVF 120 DLRLDQLEDT HDHAIVPLGN NYKSQNVPSV VPNYYMMKRV LPLTWVYMYP YYHRDYASTS 180 ASATTFNKPL SGISSSSNSS S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g050730.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC247079	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone hba-30m22 map 11, complete sequence
GenBank	AC247136	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-51n5 map 11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250846.1	1e-152	transcription factor MYBS3-like
TrEMBL	A0A3Q7IWL8	1e-150	A0A3Q7IWL8_SOLLC; Uncharacterized protein
STRING	Solyc11g050730.1.1	1e-151	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7454	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-27	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Solyc11g050730.1.1
Entrez Gene	101256155

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]