PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g051000.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 193aa MW: 22518.6 Da PI: 10.0614

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g051000.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.5	6.1e-15	2	62	29	90
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t+r+ +C+keg+ +k++ +++r+etrt+C a++ ++++++gk+ v+++e++HnH+l+ Solyc11g051000.1.1 2 TSRKITCYKEGYGGLDKRD-MLVKKPRKETRTSCLAHMIISRQSNGKFSVISFEEKHNHPLV 62 78999*********999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-12	2	62	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTSRKITCYK EGYGGLDKRD MLVKKPRKET RTSCLAHMII SRQSNGKFSV ISFEEKHNHP 60 LVHQSLGKAS LGFTKRDHKN YLRDKRKESL QYGVARSLVN YFEERYEANF LNAWEEILEK 120 CDLKDNSWLK NTFAIREKWS MSYGRNIFSA SMQSTQLSES FNGSLKGYLK SDLDIVQFFK 180 NFQRADDDKR AN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g051000.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC247075	1e-147	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-22d4 map 11, complete sequence
GenBank	AC247140	1e-147	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-57f15 map 11, complete sequence
GenBank	AC247141	1e-147	Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10l5 map 11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481065.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018632604.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_018632605.1	2e-46	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	K4D8R2	1e-141	K4D8R2_SOLLC; Uncharacterized protein
STRING	Solyc11g051000.1.1	1e-142	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Solyc11g051000.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]