PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g064990.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 252aa MW: 29828.8 Da PI: 7.7717

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g064990.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.6	7.5e-37	24	116	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++ ++++sw e +n+fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF++++Fkkg+k+ Solyc11g064990.1.1 24 FLTKTYQLVDDPSSDHIVSWGEYENTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPER---------WEFANEHFKKGQKH 105 9**************************************************************999.........********** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r++s+ Solyc11g064990.1.1 106 LLCEIQRRRST 116 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.6E-58	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.2E-38	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.8E-34	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.3E-32	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-19	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-19	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-19	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MASSSTCGDQ EMIFTMQKAM VAPFLTKTYQ LVDDPSSDHI VSWGEYENTF VVWRPPEFAK 60 DLLPNYFKHN NFSSFVRQLN TYGFKKIVPE RWEFANEHFK KGQKHLLCEI QRRRSTPQQL 120 HHLTPYQEHI TRSIYHQEIQ NPSSTVDHDI LLALTQDNER LRKRNIVLLS ELTRMKNLYN 180 DIIYFIQNHV KPVEEKSRVF LLNGGLNHHH RQVHNEDHEE PKSDKVKLFG VSLCGKKRLY 240 HERIDQEELE C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	6e-23	21	116	17	123	Heat shock factor protein 1
5d5u_B	9e-23	21	113	26	129	Heat shock factor protein 1
5d5v_B	9e-23	21	113	26	129	Heat shock factor protein 1
5d5v_D	9e-23	21	113	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g064990.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251349.3	0.0	heat stress transcription factor B-4b-like
Swissprot	Q9C635	4e-78	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A3Q7IYP8	0.0	A0A3Q7IYP8_SOLLC; Uncharacterized protein
STRING	Solyc11g064990.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2721	24	50
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-80	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Solyc11g064990.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]