PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g065700.1.1

Common Name

LOC101248742

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 301aa MW: 33061.4 Da PI: 7.2325

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g065700.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.7	1.1e-29	168	224	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy+rIl+RRq+Rak+e ekk +k+rkpylheSRh+hAlrR R+sgGrF Solyc11g065700.1.1 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKGRKPYLHESRHQHALRRVRASGGRF 224 69**********************9999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-31	166	227	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.175	167	227	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.4E-24	169	224	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-22	170	192	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-22	201	224	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MPSNSKSTNR EETNAYNVPR STVYPEPWWN GAVYTPVSPG LMRENASDSS SLEQSVDGQS 60 QSDGGINEED DDAPEKSQSV VPLHADGSYG KADQNFQPAA PAIPPRLDGS LAQPQQLELV 120 GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR 180 ILQRRQSRAK AELEKKQIKG RKPYLHESRH QHALRRVRAS GGRFAKKTDA SKGTGSVSSS 240 GSEPLQFNAA DIQKRNENGR LAELQQSYSN GSSYGNQSSF QESKDEYQSA ESREGGFSVK 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-17	168	224	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.4778	0.0	callus\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g065700.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014146	0.0	Lycopersicon esculentum clone 133265F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010313273.1	0.0	nuclear transcription factor Y subunit A-1
Refseq	XP_010313274.1	0.0	nuclear transcription factor Y subunit A-1
Refseq	XP_025883888.1	0.0	nuclear transcription factor Y subunit A-1
TrEMBL	A0A3Q7IYS8	0.0	A0A3Q7IYS8_SOLLC; Uncharacterized protein
STRING	Solyc11g065700.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3111	22	48
Representative plant	OGRP9696	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	3e-56	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Solyc11g065700.1.1
Entrez Gene	101248742

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]