PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g066170.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 364aa MW: 41476.4 Da PI: 6.9351

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g066170.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.1	7.2e-12	237	288	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++Wt+eL ++ eav++LG +kA Pk++l+ m ++Lt+ v L kYR+ Solyc11g066170.1.1 237 RKMKWTTELDKKLDEAVRELG--DKAGPKNVLKRMREPDLTVGCVTYRLKKYRS 288 68****************4..89**************************7 PP
2	Response_reg	32.8	3.7e-12	20	112	1	93
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vd + + +++++++le++ + +v++ ++++ al +l+e+ +Dli++D +m +m+ le++k + + + pi++++ + ++++++ea Solyc11g066170.1.1 20 VLLVDPDTTCLSNITTMLEQHSF-KVTAIEQASTALFILRENIdqFDLIMVDANMLEMNYLEFIKYTQLIK-DKPIVLMSPEVTMKMLKEA 108 89*******************.***********888778***************9987777.899*********99999 PP HHTT CS Response_reg 90 lkaG 93 + G Solyc11g066170.1.1 109 PSQG 112 7777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	3.3E-16	17	142	No hit	No description
SuperFamily	SSF52172	3.27E-14	17	120	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	17.883	19	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	5.1E-8	20	114	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.17E-7	21	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-11	234	292	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-8	237	289	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDCEIIRNVD IPSAYVGLKV LLVDPDTTCL SNITTMLEQH SFKVTAIEQA STALFILREN 60 IDQFDLIMVD ANMLEMNYLE FIKYTQLIKD KPIVLMSPEV TMKMLKEAPS QGICFIYKKS 120 LISSLKLRNV WKHVKWHNKK ADEKSLHYNA NPIHVSDNAS CPTKMQDLKG KSIVNSSETH 180 QDQDVGSLIE KDEAKRSKRI RSTDEEAQAK RSGPSEKEKD HSLLSRKSTE RPEKKRRKMK 240 WTTELDKKLD EAVRELGDKA GPKNVLKRMR EPDLTVGCVT YRLKKYRSQK KQAPNDEAIT 300 SMNFNEEQHS NVVNSSNLSM DVNELIQGAD IPQPPEVPLA SSSDCSLNEC ADWINEFLQL 360 EDF*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDCEIIRNVD IPSAYVGLKV LLVDPDTTCL SNITTMLEQH SFKVTAIEQA STALFILREN  60
IDQFDLIMVD ANMLEMNYLE FIKYTQLIKD KPIVLMSPEV TMKMLKEAPS QGICFIYKKS  120
LISSLKLRNV WKHVKWHNKK ADEKSLHYNA NPIHVSDNAS CPTKMQDLKG KSIVNSSETH  180
QDQDVGSLIE KDEAKRSKRI RSTDEEAQAK RSGPSEKEKD HSLLSRKSTE RPEKKRRKMK  240
WTTELDKKLD EAVRELGDKA GPKNVLKRMR EPDLTVGCVT YRLKKYRSQK KQAPNDEAIT  300
SMNFNEEQHS NVVNSSNLSM DVNELIQGAD IPQPPEVPLA SSSDCSLNEC ADWINEFLQL  360
EDF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	238	EKKRRKM
2	233	237	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g066170.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164912.1	0.0	PREDICTED: two-component response regulator ORR22-like
TrEMBL	M1D9L2	0.0	M1D9L2_SOLTU; Uncharacterized protein
STRING	Solyc11g066170.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4899	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-22	response regulator 2

Link Out ? help Back to Top
Phytozome	Solyc11g066170.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]