PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g066220.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 338aa MW: 39209.2 Da PI: 6.7843

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g066220.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	28.8	2.6e-09	238	277	3	44
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 ++Wt eL ++ eav++L ++kA Pk++le m v++Lt e Solyc11g066220.1.1 238 NMKWTAELEKKLEEAVREL--EDKAGPKNVLERMCVQDLTKE 277 599**************..*****************87 PP
2	Response_reg	36.8	2e-13	20	112	1	93
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l+vd +p+ +++++ +le++ + +v++ ++++ al +l+++ +Dli++D +m +md le++k+ + + + ii+++++ + e+++ea Solyc11g066220.1.1 20 ILLVDPDPTSLSNITAILEEHSF-KVTAIEQATVALSILRKHIdqFDLIMVDANMLEMDYLEFIKSTQLIK-DKSIILMSSEVTIEMIKEA 108 89*******************.***********999778*****************9977777.8889999999999999998 PP HHTT CS Response_reg 90 lkaG 93 G Solyc11g066220.1.1 109 PTQG 112 6665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	6.4E-17	17	154	No hit	No description
SuperFamily	SSF52172	2.42E-15	17	134	IPR011006	CheY-like superfamily
SMART	SM00448	0.0055	18	125	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	20.816	19	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.6E-9	20	113	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.19E-9	21	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-7	234	278	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDCEIICNVD VPSAYIGLRI LLVDPDPTSL SNITAILEEH SFKVTAIEQA TVALSILRKH 60 IDQFDLIMVD ANMLEMDYLE FIKSTQLIKD KSIILMSSEV TIEMIKEAPT QGICFIYEKS 120 LISSLKLKDI WKHVRWHDKK ENEESQHYNA KQVNLMDNIS CPTKMQDLKG KSKENCSATY 180 LDQEIDSLME KDAAKRSKRM RSTNEETQVK HSVSSEKEEE HSFLSKISTK RPEKKRRNMK 240 WTAELEKKLE EAVRELEDKA GPKNVLERMC VQDLTKECLT YRLKVSINTD PKNDKFRMYN 300 QLLQRSLTRN ILPKCSIQAT PLQMLMNYFE EHTDLNH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g066220.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC220059	0.0	Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164912.1	1e-168	PREDICTED: two-component response regulator ORR22-like
TrEMBL	K4B5C9	1e-175	K4B5C9_SOLLC; Uncharacterized protein
STRING	Solyc11g066220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4899	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-18	response regulator 2

Link Out ? help Back to Top
Phytozome	Solyc11g066220.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]