PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g066230.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 349aa    MW: 39989.8 Da    PI: 5.6962
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g066230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.35.3e-11215265355
             G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++Wt eL ++  e+v++LG  +kA Pk++le m v++Lt e +   L kYR+
  Solyc11g066230.1.1 215 NMKWTAELEKKLDEVVRELG--DKAGPKNVLERMCVHDLTKECLTYRLKKYRS 265
                         599****************4..89****************************7 PP
2Response_reg34.41.1e-1220112193
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         +l++d +p+ +++++ +le++ + +v++ ++++ al +l+e+   +Dli++D +m +md le++k+ +  + +  ii++++  + e+++ea
  Solyc11g066230.1.1  20 ILLIDPDPTSLSNIAAILEEHSF-KVTAIKQATVALSILREHIdqFDLIMVDANMLEMDYLEFVKSTQLIK-DKSIILISSDVTIEMIKEA 108
                         89*********************.***************999778*******************9987777.8899999999999999998 PP

                         HHTT CS
        Response_reg  90 lkaG 93 
                            G
  Solyc11g066230.1.1 109 PTQG 112
                         6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-1617157No hitNo description
SuperFamilySSF521721.71E-1417126IPR011006CheY-like superfamily
SMARTSM004480.007718125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.82419134IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-820113IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.06E-821108No hitNo description
Gene3DG3DSA:1.10.10.601.0E-10211269IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDCEIICNVD VPSAYVGLRI LLIDPDPTSL SNIAAILEEH SFKVTAIKQA TVALSILREH  60
IDQFDLIMVD ANMLEMDYLE FVKSTQLIKD KSIILISSDV TIEMIKEAPT QGICFIYEKS  120
LISSLKLKDI WKHVRLHDKK ANEESQHYKA KQVNLMDNIS CPTKMQDLKG KSKETKKRST  180
NEETQVIHSV SSEKEEEHSF LSKISTERPE KKRRNMKWTA ELEKKLDEVV RELGDKAGPK  240
NVLERMCVHD LTKECLTYRL KKYRSQKRQV PDVQPVTSTI FNEEHPSKVF NSSNSSADVN  300
ELFQGAYRPQ PLEVPLVTLP SSNDSSLIEC DEWINEFLEL DDFELKSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g066230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2200590.0Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164912.10.0PREDICTED: two-component response regulator ORR22-like
TrEMBLK4D9N10.0K4D9N1_SOLLC; Uncharacterized protein
STRINGSolyc11g066230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-17response regulator 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]