PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g068480.1.1

Common Name

LOC101260506

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 176aa MW: 19867.2 Da PI: 4.6421

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g068480.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	43.8	6.2e-14	26	121	7	97
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 lP + v r++k+ l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f + +eplk+ l+ +re Solyc11g068480.1.1 26 GLPKTIVRRLVKEKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGFRE 116 578888888888765411156666644677888899******************************************************* PP NF-YB 93 legek 97 ++++ Solyc11g068480.1.1 117 KNSKR 121 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-31	17	162	IPR009072	Histone-fold
SuperFamily	SSF47113	5.37E-24	26	135	IPR009072	Histone-fold
Pfam	PF00808	2.5E-8	27	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAEIEKQNKE KEKVVAETTV QIDQEGLPKT IVRRLVKEKL SQLSTDTDIS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PELIEPLKAS LEGFREKNSK 120 RKSTSSKSPE SNKKAKLKEP VENGKGKMKE QPSDNENEDA QAEEEVNEVE DRVDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	8e-11	7	137	4	125	DNA polymerase epsilon subunit D
5y27_A	8e-11	7	137	4	125	DNA polymerase epsilon subunit D
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16495	0.0	cell culture\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g068480.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217004	1e-119	Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251060.1	1e-122	DNA polymerase epsilon subunit 3
TrEMBL	A0A3Q7IZT6	1e-120	A0A3Q7IZT6_SOLLC; Uncharacterized protein
STRING	Solyc11g068480.1.1	1e-121	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27
Representative plant	OGRP7862	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-30	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Solyc11g068480.1.1
Entrez Gene	101260506

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]