PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g069770.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20857.8 Da    PI: 5.1994
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g069770.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181866149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ++ienk +r+vtfskRr g++KK +ELS LCd   a ++fs++++   y
  Solyc11g069770.1.1 18 EKIENKKKRSVTFSKRRYGLFKKESELSMLCDSPNATVVFSPDDETCVY 66
                        57****************************************9986555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.2641067IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-191069IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-211190IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-151232IPR002100Transcription factor, MADS-box
PfamPF003192.3E-201964IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRDLIMARL GRRRIRIEKI ENKKKRSVTF SKRRYGLFKK ESELSMLCDS PNATVVFSPD  60
DETCVYSIGY PCVNSVLDKF MDVNPPQNLD DTGSLSVHRR NAIREGVLAL MEIEEEFEEE  120
KKREKSLDTG ISYENLNSSV YQNFIEKIEI GYMEAEQLAI ELKERNVPFP YSTFGDALAP  180
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11125RRRIRIEKIENKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g069770.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019066402.11e-131agamous-like MADS-box protein AGL29 isoform X1
TrEMBLA0A3Q7JPS61e-127A0A3Q7JPS6_SOLLC; Uncharacterized protein
STRINGSolyc11g069770.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-16AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]