PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g072150.1.1

Common Name

LOC101267198

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 306aa MW: 33422.9 Da PI: 4.6829

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g072150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.8	5.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ ++ ++++ ++fdfl d+v r Solyc11g072150.1.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKHCIQSFNVFDFLKDVVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.2E-20	3	88	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	1.0E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRKRLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKKGAK 60 TMNSFHLKHC IQSFNVFDFL KDVVSRVPDL GGSDAGAESA TKRRKVAEED DHDSDDDTKR 120 NHANETANNS GTGRGRGRGR GRGRGRGSRA VEKGDYHAHS EKLEDAAADV SHQKDDENQK 180 QNDERMVDYV AESAVDSKNI SAAKCSPEVV APARNFDLNI DLNESVESTP MPSEVPLSST 240 ATPTPTPTAT PAPAPAPAPA PDELKHEEIP GWSLSEMEKM AIDPIQLANL NQGLDEEEED 300 YDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	145	RGRGRGRGRGR
2	137	146	RGRGRGRGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7871	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g072150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244600	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251241.1	0.0	dr1-associated corepressor
TrEMBL	M1CM70	1e-162	M1CM70_SOLTU; Uncharacterized protein
STRING	Solyc11g072150.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-56	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Solyc11g072150.1.1
Entrez Gene	101267198

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]