PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g072330.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 331aa MW: 36482.8 Da PI: 9.2863

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g072330.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	69.8	4.2e-22	150	203	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp++ Wt LH++F+ea++ + G kA+Pk+i e+m+v+gLt+e+v SH QkYR Solyc11g072330.1.1 150 KPQIIWTDSLHHAFLEAIHDI-GFSKAVPKKIHEHMNVPGLTRENVSSHWQKYRN 203 68999**************.9*****************************6 PP
2	Response_reg	37.7	1.1e-13	11	100	1	90
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l+vdD+ + +++++++l+k +y ++ +++ + +al +l k +Dli++D+ ++m+G +l + i+e+ ++p++ ++a ++e +l+ Solyc11g072330.1.1 11 ILVVDDNAAYLQVVAELLKKCNY-QAVAVKYPIDALPKLqiKVDSCDLIVIDVHKSDMNGCKLQEMIAEAF-EIPVLSMSADQKEGAILKG 99 89*******************.666677777888777346666******************9999.9******9999888887 PP H CS Response_reg 90 l 90 l Solyc11g072330.1.1 100 L 100 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	2.5E-16	6	101	No hit	No description
SuperFamily	SSF52172	6.69E-15	7	101	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	19.159	10	126	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.9E-9	11	101	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.77E-8	12	101	No hit	No description
SuperFamily	SSF46689	1.65E-16	148	207	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-22	149	207	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-20	150	203	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-7	155	202	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MSSKTAQKIS ILVVDDNAAY LQVVAELLKK CNYQAVAVKY PIDALPKLQI KVDSCDLIVI 60 DVHKSDMNGC KLQEMIAEAF EIPVLSMSAD QKEGAILKGL KGLSVDDQRD KGLCTVLQEK 120 KGKRAVPGKS AMKQRKRGKD NSGDLVLPTK PQIIWTDSLH HAFLEAIHDI GFSKAVPKKI 180 HEHMNVPGLT RENVSSHWQK YRNYLHRVID SSSINKVPDK NLASRANQST IASGMLVKHR 240 QVHQENFGVQ SSVPSSLIHP STGYLTGNLQ HLKNKGKEVD VVLDPVRNFS VFHKVSAMQG 300 LQGIGDLSAS SMNQGNDQPH QDMETEDNLQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-14	150	208	5	63	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.22868	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g072330.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251256.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_004251257.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_010313509.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_010313510.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_010313513.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_010313514.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_019066717.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_019066718.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_019066719.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_025883995.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_025883996.1	0.0	two-component response regulator ORR21 isoform X1
Refseq	XP_025883997.1	0.0	two-component response regulator ORR21 isoform X1
TrEMBL	A0A3Q7J109	0.0	A0A3Q7J109_SOLLC; Uncharacterized protein
STRING	Solyc11g072330.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3290	20	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-32	response regulator 2

Link Out ? help Back to Top
Phytozome	Solyc11g072330.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]