PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g072600.1.1
Common NameLOC100736472
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 482aa    MW: 53069.1 Da    PI: 7.1418
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g072600.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17159208155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Solyc11g072600.1.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-16159217IPR016177DNA-binding domain
SMARTSM003801.3E-32160222IPR001471AP2/ERF domain
PROSITE profilePS5103217.794160216IPR001471AP2/ERF domain
CDDcd000181.33E-11160218No hitNo description
Gene3DG3DSA:3.30.730.103.5E-17160217IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-6251295IPR016177DNA-binding domain
CDDcd000183.20E-13251296No hitNo description
SMARTSM003801.1E-12252300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMLDLNLNAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAGD MFAFNFDILK  60
VGGGGSGSGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP MDNNAELNRT HTSRRPDWVD  120
PSVDPPNTVS FREVQQMGRL QQQQQPVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNLSDY EEDMKQMKNL SKEEFVHVLR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKAYDKA AIKCNGREAV TNFEPSAYEG  300
EINSNPQSEG SQQDLDLNLG IATSSPKEVE RSSSFQYHPY DMQEASKSQM DKSGSPIVGS  360
SHYKALPAVT SEQAHLWNGA YSNLIPNYEE RVSGKRIDVG TSHGHPNWAM QMHSQVGTTP  420
LSMFSAAASS GFSTPATTAS ASQISGPNNP NTLNLSFASY SSPSTNTAQY YYQIRPQLPP  480
P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.164500.0fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g072600.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313188.10.0AP2 transcription factor SlAP2d isoform X1
SwissprotQ9SK031e-109RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7J1X40.0A0A3Q7J1X4_SOLLC; Uncharacterized protein
STRINGSolyc11g072600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-106related to AP2.7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Karlova R, et al.
    Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.
    Plant Cell, 2011. 23(3): p. 923-41
    [PMID:21398570]