PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g072770.1.1

Common Name

LOC101266096

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WOX

Protein Properties

Length: 198aa MW: 22760.1 Da PI: 9.8426

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g072770.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ ++ ++++++l +++ ++V++WFqN++a++++ Solyc11g072770.1.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSSQVQKITTHLslygKIQCKNVFYWFQNHKARDRQ 63 89***************99***********************************996 PP
2	Wus_type_Homeobox	107.7	7.2e-35	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P+++++q+it++L+ yGki+ kNVfyWFQN+kaR+rqk Solyc11g072770.1.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSSQVQKITTHLSLYGKIQCKNVFYWFQNHKARDRQK 64 579***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.2E-7	1	68	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.787	1	64	IPR001356	Homeobox domain
CDD	cd00086	3.63E-6	2	64	No hit	No description
Pfam	PF00046	1.6E-16	3	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.9E-8	3	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.89E-11	3	64	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MPRPRWSPTP QQLMILQDLY RKGLRNPTSS QVQKITTHLS LYGKIQCKNV FYWFQNHKAR 60 DRQKLRKELM MLHKIHKNTS DDDVPHQFHT TQNTNSNLEY NFPPSTFHTL YPQSPSILVH 120 QGEGKDTSSS STQMMNNMGN VDFPKHCVIE NGMMRTNVQG WILMMTDMGP ISIPSCSSNK 180 PLETLELFPI KATGIKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g072770.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251451.1	1e-147	WUSCHEL-related homeobox 3-like
TrEMBL	A0A3Q7J0Z7	1e-146	A0A3Q7J0Z7_SOLLC; Uncharacterized protein
STRING	Solyc11g072770.1.1	1e-147	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51
Representative plant	OGRP5580	11	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	3e-31	WOX family protein

Link Out ? help Back to Top
Phytozome	Solyc11g072770.1.1
Entrez Gene	101266096

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]