PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g073060.1.1
Common NameLOC101261583
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 155aa    MW: 17369.1 Da    PI: 10.2848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g073060.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000943658123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k+F++   L  H  +H
  Solyc11g073060.1.1 36 FACKTCNKRFPSFQALGGHRTSH 58
                        78**********99998888777 PP
2zf-C2H213.60.000197597123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC++Cg+ F     L  H+r+H
  Solyc11g073060.1.1 75 HKCSICGMEFALGQALGGHMRRH 97
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-83697No hitNo description
SMARTSM003550.173658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8893663IPR007087Zinc finger, C2H2
PfamPF139122.4E-113660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-473100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-974100IPR007087Zinc finger, C2H2
SMARTSM003550.0527597IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.97275102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTTMKRSRED NGQVEAEAMA NCALMLLSRL NNNNDFACKT CNKRFPSFQA LGGHRTSHNK  60
KPKLLGETNQ KSKVHKCSIC GMEFALGQAL GGHMRRHRDE INKVTSHEKT IIPILHSSKR  120
ISIFGVNLNI TPNVDDLKLW PIEEAPSPVL RIFF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g073060.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251306.11e-112zinc finger protein ZAT11-like
SwissprotQ9SLD47e-27ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3Q7J2571e-109A0A3Q7J257_SOLLC; Uncharacterized protein
STRINGSolyc11g073060.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]