PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g005210.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 89aa    MW: 9985.65 Da    PI: 10.4073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g005210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-1222501442
                        HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                         kR + ++K A+ LS+LCd+ev vi+f++
  Solyc12g005210.1.1 22 DKRIEALFKQANDLSILCDIEVGVIVFGP 50
                        69*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.045149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-13980IPR002100Transcription factor, MADS-box
PfamPF003196.9E-111851IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MTMKGVRSTR NVDPRMKKFI LDKRIEALFK QANDLSILCD IEVGVIVFGP GENNAVVWPS  60
LAQASDRVKN YLARHRDCKG KEVVNVRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g005210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060034.16e-45MADS-box transcription factor 47-like
TrEMBLA0A3Q7J2542e-58A0A3Q7J254_SOLLC; Uncharacterized protein
STRINGSolyc12g005210.1.13e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-11AGAMOUS-like 96
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]