PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g005640.1.1
Common NameLOC101255770
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 234aa    MW: 27158.8 Da    PI: 7.6376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g005640.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-161562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Solyc12g005640.1.1 15 KGTWTLEEDKKLAAYVNKYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 62
                        799*****************99************************97 PP
2Myb_DNA-binding51.22.9e-1668111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eEd+++ +++++ G++ W++Ia +++ gR+++++k++w++
  Solyc12g005640.1.1  68 RGNYTREEDQIIMKLHAEIGNK-WSAIAIHLP-GRSDNEIKNHWHT 111
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5771062IPR017930Myb domain
SuperFamilySSF466893.02E-3012109IPR009057Homeodomain-like
SMARTSM007174.1E-111464IPR001005SANT/Myb domain
PfamPF002491.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221669IPR009057Homeodomain-like
CDDcd001671.66E-81762No hitNo description
PROSITE profilePS5129425.53963117IPR017930Myb domain
SMARTSM007176.0E-1567115IPR001005SANT/Myb domain
PfamPF002494.6E-1568111IPR001005SANT/Myb domain
CDDcd001671.57E-970113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2570116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MARIRCYDKK SGLKKGTWTL EEDKKLAAYV NKYGCWNWRQ LPKFAGLSRC GKSCRLRWLN  60
YLRPNIKRGN YTREEDQIIM KLHAEIGNKW SAIAIHLPGR SDNEIKNHWH TSLKKRSKHE  120
LTISNGKKRE ASNVNQKSDE DQNITPNESY SEVSPCVTID QNMEDIMDGK CEMIQEKSFE  180
ECIGNFWTEP FLIDSFNSTT NNNTEFCVPL EVEYGLFISP FSPIMCYDEF LCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28131165107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g005640.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095330.0Solanum lycopersicum DNA sequence from clone LE_HBa-140M1 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252033.11e-176transcription factor MYB14-like
TrEMBLA0A3Q7JR501e-174A0A3Q7JR50_SOLLC; Uncharacterized protein
STRINGSolyc12g005640.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-54myb domain protein 14
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]