PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g006280.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 175aa MW: 20316.2 Da PI: 9.9449

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g006280.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93	2.4e-29	29	82	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+ F++ v++LGG +kAtPk+i+++m +kgL ++hvkSHLQ+YR Solyc12g006280.1.1 29 PRLRWTPQLHHLFIQSVQNLGGRNKATPKRIVQMMAIKGLKISHVKSHLQMYRN 82 9****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-25	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-22	29	82	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-13	29	84	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-7	30	81	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEIFLMSQEM MRKSKKMKEV RKYKKSLAPR LRWTPQLHHL FIQSVQNLGG RNKATPKRIV 60 QMMAIKGLKI SHVKSHLQMY RNMREHPSLH VVMQDFNLSS PMHVSKILGE HAQNSRKQKE 120 SGSQNGENIH YNDFQEVEGS LSSGMTKEEE EDNDGEIYEY RETSTQINLD LTLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	30	84	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	30	84	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g006280.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251553.1	1e-127	putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A3Q7JRD0	1e-126	A0A3Q7JRD0_SOLLC; Uncharacterized protein
STRING	Solyc12g006280.1.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	9e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc12g006280.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]