PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g007180.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CPP
Protein Properties Length: 499aa    MW: 54518.7 Da    PI: 7.3274
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g007180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1487126242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Solyc12g007180.1.1  87 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCHNNVEN 126
                         89**************************.********9875 PP
2TCR51.22.5e-16171210140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Solyc12g007180.1.1 171 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 210
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-1686126IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.08887211IPR005172CRC domain
PfamPF036381.6E-1188123IPR005172CRC domain
SMARTSM011148.4E-20171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.2E-13174209IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSVFSCIPVE TGICEWPRGK KMFGLPFCSF SFDPVWLSVF IFWLICEAIH DFRDDNHDPL  60
LATLKPESPR ARPRQSASEV KDGTPKKQKQ CNCKHSRCLK LYCECFASGV YCDGCNCNNC  120
HNNVENEPAR REAVEATLER NPHAFRPKIA SSPHGARDNK EEAGDGLVLA KHNKGCHCKK  180
SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSEERQALFH GDHANNMAYL QQAANAAITG  240
AIGSSGYGSP PVNKKRKSQE LFFGSTIKDP IHRHGQLQQG NHIKSSVLPS LSSSPGPCVG  300
NAATVGPSKF TYRSLLEDLI QPQDLKELCS VLVVYSGEAA KMLADEKDAS KKQAEGQTQA  360
SLASSTQEQV QNQKDSGSEK DMLDCSLSGD QGEKISMKES SLDGADVSKR RPMSPGTLAL  420
MCDESDSMFA AAITSPDDLA TLGCNTSSQL PHGQGMTETY AEQERIVLTK FRDCLNRLVT  480
LGEIKGRGKK MFFNGAGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-32792202132Protein lin-54 homolog
5fd3_B4e-32792202132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g007180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251614.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-178TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A3Q7J2R30.0A0A3Q7J2R3_SOLLC; Uncharacterized protein
STRINGSolyc12g007180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-169Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]