PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g007300.1.1
Common NameLOC101254974
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 236aa    MW: 26592.6 Da    PI: 10.5455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g007300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-13128217181
                         EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                         f+k+lt+sdv+ + gr+ l+++++++         +++ ++++ ++  d+ g+  ++k++ +++ ++y+l + Wk+Fv+++gLk+ D v+
  Solyc12g007300.1.1 128 FVKQLTNSDVNGHqGRFLLSNEYVRNQllpllnekSEDLTTGISVKTFDPMGKYCNMKFKTWGNHKTYLLLGSWKQFVQEHGLKVSDCVT 217
                         99********9987999*******888***9987633334777888899***999999999**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-17128228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-18128224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-14128231No hitNo description
PfamPF023628.8E-10128217IPR003340B3 DNA binding domain
SMARTSM010190.0069128233IPR003340B3 DNA binding domain
PROSITE profilePS508639.643129235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKLEKEDIE AALLLSWLKY VPVFPKKEEK SKRKHRRFIK NETPEIQIPK RVKNSPSASG  60
FEVYGAGNPK RVRLSSNSNG GQAASSSRNS NPVPKRGRVS PSNLPGSLPK FPPIENLTTL  120
IGQCSNPFVK QLTNSDVNGH QGRFLLSNEY VRNQLLPLLN EKSEDLTTGI SVKTFDPMGK  180
YCNMKFKTWG NHKTYLLLGS WKQFVQEHGL KVSDCVTGWM FRHNRTGELC FALTW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.80210.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g007300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251622.11e-175uncharacterized protein LOC101254974
TrEMBLA0A3Q7J2E91e-173A0A3Q7J2E9_SOLLC; Uncharacterized protein
STRINGSolyc12g007300.1.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Representative plantOGRP1051734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-27B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]