PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g009050.1.1

Common Name

LOC101247294

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 254aa MW: 28143.3 Da PI: 8.8583

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g009050.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.3	2.2e-32	116	172	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF Solyc12g009050.1.1 116 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-35	114	175	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.798	115	175	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	118	140	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.9E-28	118	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	120	140	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-23	149	172	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKSLDPDLQG ETLRLTHTTL NSQDEMTASG KTNSQDQCAS SEYAHDERYG RDMQVQIKPA 60 LFSLQNEVAN STGLSAFGYS DPYISGLYTA YGPQPYPQMM GIAPTRVPLP VDMAEDGPIY 120 VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ 180 SDPNSYPTNS TSSLDSVEHE GSTSAFSSVR QDVVHNGINF QQQQPDHMAF SVSSHMVITM 240 QGNGTQQHAP VVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-22	116	185	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g009050.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251681.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_010313762.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X3
Refseq	XP_010313763.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X3
Refseq	XP_010313764.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X3
TrEMBL	M0ZH82	1e-178	M0ZH82_SOLTU; Uncharacterized protein
STRING	Solyc12g009050.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-41	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Solyc12g009050.1.1
Entrez Gene	101247294

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]