PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g009390.1.1
Common NameLOC101255767
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 430aa    MW: 45770.1 Da    PI: 8.2687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g009390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11426225
                        -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                        + e+Cr+f+r G C+yG+rCkF H
  Solyc12g009390.1.1  4 RKEPCRNFMR-GSCQYGERCKFLH 26
                        789*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.737229IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6429IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-8629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPPRKEPCRN FMRGSCQYGE RCKFLHAAQQ QPKPNPFGFG SQSTNFQSTN MQQTKSNPFG  60
FGVQSNSQPR GSSDLGLKQN QYKPFENKWT RSATTNSSSS RQTDNQPVAP NHTCTDAESC  120
RRQIVEDFNN EKPLWLLTCY GHRKNGPCDI TGDVSYEELR AVAYDDAKRG QSLMSIVERE  180
RSQVNSKVAE FENLLQNPYA SSSTSALNAQ SPFPGATPSA SLSAQSPFPG ATPSASSPFP  240
GAAPNASLSA QSPFPGAAPN ALSSAQSSFP PSASSFSQLG TILNTGTSTP PTSTFGQPSL  300
PGNSFKTSNS SGVNAFSFGN TSTSGSFGFG TQVPTQSYQN PSTPSSIFAS SGRNLFSTST  360
TSPHFANPSG GQLPTTSQGL FPVATSPVSI NLTNIASTED FSGDNSIWTK KEWKIGEIPE  420
EAPPDRYVF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.136220.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g009390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251711.10.0zinc finger CCCH domain-containing protein 16
TrEMBLA0A3Q7J3J80.0A0A3Q7J3J8_SOLLC; Uncharacterized protein
STRINGSolyc12g009390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.15e-65C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]