PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g009580.1.1

Common Name

LOC101258923

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 192aa MW: 21795.6 Da PI: 8.3868

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g009580.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	185.9	2e-57	11	157	7	170
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 e++Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a ++ + ++hl++++ + + + k + as+s++ Solyc12g009580.1.1 11 FEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHD---------QYKVDFASSSIT 92 589**************************************************977665543222221.........122222222222 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + n++ e +v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl Solyc12g009580.1.1 93 N-----NSTLE---ERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 157 2.....22222...23589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-66	12	157	IPR006780	YABBY protein
SuperFamily	SSF47095	5.11E-8	102	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSSSYIDSTN FEKLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHT 60 NSWQNHLHHQ VGNYTNSPHD QYKVDFASSS ITNNSTLEER NVNRPPEKRQ RGPSAYNQFI 120 KEEIQRIKAN NPDITHREAF STAAKNWAHF PHIQFGLMLE TDNQAKLGAS ENKEKLIMHR 180 AALPKIKTFT F*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g009580.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209588	3e-68	Solanum lycopersicum DNA sequence from clone LE_HBa-146I19 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251722.1	1e-143	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	1e-74	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A3Q7J3Z5	1e-142	A0A3Q7J3Z5_SOLLC; Uncharacterized protein
STRING	Solyc12g009580.1.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-77	YABBY family protein

Link Out ? help Back to Top
Phytozome	Solyc12g009580.1.1
Entrez Gene	101258923

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]